Protein ZmbHLH13 | |
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Information | |
TF Name: | ZmbHLH13 |
Species: | Maize |
TF Family: | bHLH |
Gene Name(Synonym): | BHLH13 |
Uniprot ID: | K7TZI1 |
Subgenome: | 2 |
ZmbHLH13 is a protein in the bHLH family.
Overview of domains present in v5 transcripts | |
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PF00010 | |
Zm00001eb187720_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d051509 | DAPseq | sequence | fimo | position | |
Zm00001d051509 | DAPseq | sequence | fimo | position | |
Zm00001d051509 | ChIPseq | sequence | fimo | position | |
Zm00001d051509 | PChIPseq | sequence | fimo | position |
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00010 |
|
PF00010 |
|
Hover here to show all domains |
AGAGGGGAAGAAACTTTTACATCAA...
AGAGGGGAAGAAACTTTTACATCAACATTTTTAATGGAAGAATTCTCTGGGAGTAATCGTGGATCAGATCCGTTACCATCTCTAGCCTACACCACTAGCTAGGGAGAGAGAAACATACGCGTGCCCCAACGCAGAAACCTCAGATACGCATCAGTTGCCAGCAGCAGCCGACGCAGCGCGGGGAAGAGCCATAAGTAGTAGACGGCGGGCGGCGCGGCGGAGTCACCCCGCAAGCAAACGATACCCAGAGTGTCGCAAAGAGCTTACGAGTTACCACACGAGAAGAAGACACGCACGCGCCGTCATGCCGGCTCTAGTGGGCGCGCCGCCCGGCGACGCCACCGTGCTCGTCTACGACACCTTCAACGCCGCCAGCTTCCTCTTGGACACTGCCGCGTTCTGCGACGGCGCCGGCATTATTGCCGTCGCCCCGGCGTCCGCGAACCAGCAGCAGCATGCGCCGCCGGAGCGGGAGGCGCCGACTAGGGCCAGGAAGCGGCGGCGGCGGGCGCGGAACTGCAAGTCCAGGGAGGAGGCCGAGACCCAGCGGATGACGCACATCGCCGTCGAGCGCAACCGCCGCCGCCAGATGAACGAGTACCTCGCCGCGCTCCGCTCCACCATGCCGGAGGCCTACGTCCAGAGGGGGGACCAAGCTTCCATCGTGGGAGGGGCAATCGTGTTCGTGAGGGAGCTGGAGCAGCAGCTGCAGTGCCTCGAGGCGCAGAAGCGGAAGCTGCTGCACGTTCCGGCGGCGGCGAAGCCTGACGCGACGCCAGCGCACGCCAGCAGCAGCAGCACCAAGATCCGCGTGGATTCCGCGGCGGCGTCGACGAGCAACTGCAGCAGCAGCAGCAGCGTGACGGAGGACGCGGCGGGCCACGCGCGGCCGGCCCCGTTCGCGCGGTTCTTCACGTACCCGCAGTACCTGTGGTGCCACTCGGCGCGCGGTGCTGCTGCGGCGGCGGCAGCGGAGGAGGAGGAGGACGGCCGGCGGTTGGGGGTGGCCGACGTCGAGGTGGCCTTGGTGGAGGCGCACGGTAGCATCCGCGTGATGACGGCGCGGAGGCCCGGGCAGCTCGTCTGCCTGGTCACCGCGCTCCAGGCGCTCCGCCTCGCCGTGCTCCACCTCAGCGTCACCACGCTGGACGCCCTTGTCCTCTACTCCATCAGCGTCAAGGTGGAGGAAGGGTGCGGCCTGGCGACGGCGGACGACGTCGCGGCCGCTGTGCACCACGTGCTTTGCATCGTCGACGCCGAGGCCACCGACCAGCAGCTGCTCGCGGCAGCGCGGCCGCAATAGGGCCGACCGACGTCGTCCCCGGGTCCATCGAGGAGGCGAGCGTAGATGCGACGTGGCTGAAAAGGCCATGTACAGGCATAGGCGTCTTCAAGGCTCCGTTCAAACGCTTCGGTGTAATTTTGTAGTTTCATCTCTGTCTTTTTGGCTGTTTTTTTTCTTTTCGTAGTACTTGTTACTAGTACATGCATGTGTAAGCGTCTTTTCGGCAAGCAACTCTACAGATTTTTGTTCAAGGACG
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
TCCACGTTCTTTACCCGTAGAGGGG...
TCCACGTTCTTTACCCGTAGAGGGGAAGAAACTTTTACATCAACATTTTTAATGGAAGAATTCTCTGGGAGTAATCGTGGATCAGATCCGTTACCATCTCTAGCCTACACCACTAGCTAGGGAGAGAGAAACATACGCGTGCCCCAACGCAGAAACCTCAGATACGCATCAGTTGCCAGCAGCAGCCGACGCAGCGCGGGGAAGAGCCATAAGTAGTAGACGGCGGGCGGCGCGGCGGAGTCACCCCGCAAGCAAACGATACCCAGAGTGTCGCAAAGAGCTTACGAGTTACCACACGAGAAGAAGACACGCACGCGCCGTCATGCCGGCTCTAGTGGGCGCGCCGCCCGGCGACGCCACCGTGCTCGTCTACGACACCTTCAACGCCGCCAGCTTCCTCTTGGACACTGCCGCGTTCTGCGACGGCGCCGGCATTATTGCCGTCGCCCCGGCGTCCGCGAACCAGCAGCAGCATGCGCCGCCGGAGCGGGAGGCGCCGACTAGGGCCAGGAAGCGGCGGCGGCGGGCGCGGAACTGCAAGTCCAGGGAGGAGGCCGAGACCCAGCGGATGACGCACATCGCCGTCGAGCGCAACCGCCGCCGCCAGATGAACGAGTACCTCGCCGCGCTCCGCTCCACCATGCCGGAGGCCTACGTCCAGAGGGGGGACCAAGCTTCCATCGTGGGAGGGGCAATCGTGTTCGTGAGGGAGCTGGAGCAGCAGCTGCAGTGCCTCGAGGCGCAGAAGCGGAAGCTGCTGCACGTTCCGGCGGCGGCGAAGCCTGACGCGACGCCAGCGCACGCCAGCAGCAGCAGCACCAAGATCCGCGTGGATTCCGCGGCGGCGTCGACGAGCAACTGCAGCAGCAGCAGCAGCGTGACGGAGGACGCGGCGGGCCACGCGCGGCCGGCCCCGTTCGCGCGGTTCTTCACGTACCCGCAGTACCTGTGGTGCCACTCGGCGCGCGGTGCTGCTGCGGCGGCGGCAGCGGAGGAGGAGGAGGACGGCCGGCGGTTGGGGGTGGCCGACGTCGAGGTGGCCTTGGTGGAGGCGCACGGTAGCATCCGCGTGATGACGGCGCGGAGGCCCGGGCAGCTCGTCTGCCTGGTCACCGCGCTCCAGGCGCTCCGCCTCGCCGTGCTCCACCTCAGCGTCACCACGCTGGACGCCCTTGTCCTCTACTCCATCAGCGTCAAGGTGGAGGAAGGGTGCGGCCTGGCGACGGCGGACGACGTCGCGGCCGCTGTGCACCACGTGCTTTGCATCGTCGACGCCGAGGCCACCGACCAGCAGCTGCTCGCGGCAGCGCGGCCGCAATAGGGCCGACCGACGTCGTCCCCGGGTCCATCGAGGAGGCGAGCGTAGATGCGACGTGGCTGAAAAGGCCATGTACAGGCATAGGCGTCTTCAAGGCTCCGTTCAAACGCTTCGGTGTAATTTTGTAGTTTCATCTCTGTCTTTTTGGCTGTTTTTTTTCTTTTCGTAGTACTTGTTACTAGTACATGCATGTGTAAGCGTCTTTTCGGCAAGCAACTCTACAGATTTTTGTTCAAGGACGTGTAGGCGGCCGCCACCAAAAAAAATATTTAACGTTAGGTATGTA
MPALVGAPPGDATVLVYDTFNAASFLLDTAAFCDGAGIIAVAPASANQQQHAPPEREAPTRARKRRRRARNCKSREEAET
QRMTHIAVERNRRRQMNEYLAALRSTMPEAYVQRGDQASIVGGAIVFVRELEQQLQCLEAQKRKLLHVPAAAKPDATPAH
ASSSSTKIRVDSAAASTSNCSSSSSVTEDAAGHARPAPFARFFTYPQYLWCHSARGAAAAAAAEEEEDGRRLGVADVEVA
LVEAHGSIRVMTARRPGQLVCLVTALQALRLAVLHLSVTTLDALVLYSISVKVEEGCGLATADDVAAAVHHVLCIVDAEA
TDQQLLAAARPQ
GTCACCCCGCAAGCAAACGATACCC...
GTCACCCCGCAAGCAAACGATACCCAGAGTGTCGCAAAGAGCTTACGAGTTACCACACGAGAAGAAGACACGCACGCGCCGTCATGCCGGCTCTAGTGGGCGCGCCGCCCGGCGACGCCACCGTGCTCGTCTACGACACCTTCAACGCCGCCAGCTTCCTCTTGGACACTGCCGCGTTCTGCGACGGCGCCGGCATTATTGCCGTCGCCCCGGCGTCCGCGAACCAGCAGCAGCATGCGCCGCCGGAGCGGGAGGCGCCGACTAGGGCCAGGAAGCGGCGGCGGCGGGCGCGGAACTGCAAGTCCAGGGAGGAGGCCGAGACCCAGCGGATGACGCACATCGCCGTCGAGCGCAACCGCCGCCGCCAGATGAACGAGTACCTCGCCGCGCTCCGCTCCACCATGCCGGAGGCCTACGTCCAGAGGGGGGACCAAGCTTCCATCGTGGGAGGGGCAATCGTGTTCGTGAGGGAGCTGGAGCAGCAGCTGCAGTGCCTCGAGGCGCAGAAGCGGAAGCTGCTGCACGTTCCGGCGGCGGCGAAGCCTGACGCGACGCCAGCGCACGCCAGCAGCAGCAGCACCAAGATCCGCGTGGATTCCGCGGCGGCGTCGACGAGCAACTGCAGCAGCAGCAGCAGCGTGACGGAGGACGCGGCGGGCCACGCGCGGCCGGCCCCGTTCGCGCGGTTCTTCACGTACCCGCAGTACCTGTGGTGCCACTCGGCGCGCGGTGCTGCTGCGGCGGCGGCAGCGGAGGAGGAGGAGGACGGCCGGCGGTTGGGGGTGGCCGACGTCGAGGTGGCCTTGGTGGAGGCGCACGGTAGCATCCGCGTGATGACGGCGCGGAGGCCCGGGCAGCTCGTCTGCCTGGTCACCGCGCTCCAGGCGCTCCGCCTCGCCGTGCTCCACCTCAGCGTCACCACGCTGGACGCCCTTGTCCTCTACTCCATCAGCGTCAAGGTGGAGGAAGGGTGCGGCCTGGCGACGGCGGACGACGTCGCGGCCGCTGTGCACCACGTGCTTTGCATCGTCGACGCCGAGGCCACCGACCAGCAGCTGCTCGCGGCAGCGCGGCCGCAATAGGGCCGACCGACGTCGTCCCCGGGTCCATCGAGGAGGCGAGCGTAGATGCGACGTGGCTGAAAAGGCCATGTACAGGCATAGGCGTCTTCAAGGCTCCGTTCAAACGCTTCGGTGTAATTTTGTAGTTTCATCTCTGTCTTTTTGGCTGTTTTTTTTCTTTTCGTAGTACTTGTTACTAGTACATGCATGTGTAAGCGTCTTTTCGGCAAGCAACTCTACAGATTTTTGTTCAAGGACGTGTAGGCGGCCGCCACCAAAAAAAATATTTAACGTTAGGTATGTACCGAACATATACGTGTCGCTGG
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